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Phylogenetic Forensics, HIV, and a Dentist

By Elizabeth R. Everman

Phylogenetic Forensics, HIV, and a Dentist


 

Abstract

This PowerPoint-driven case study provides an applied context for the study of the structure of nucleotides and DNA, the classes and frequencies of single nucleotide mutations, and the process of DNA replication. Students prepare for the case by reading a news article in The New York Times (subscription required) from the early 1990s about the transmission of HIV from a dentist to several of his patients. Students are tasked with the goal of determining if the dentist was likely to have infected so many patients using DNA evidence. The instructor uses a slide deck (see Supplemental Materials) to help students complete a series of questions in the case study handout. After a review of how mutations occur and the likelihood of different types of mutations, students apply their knowledge of DNA replication to PCR and sequencing to copy and then read the sequence of an HIV gene. Using sequence alignment and their new knowledge of HIV-specific mutation rates, students determine how many patients were likely to have been infected by the dentist. The case was originally designed for an upper-level genetics course but could be easily adapted for a more general course focusing on applications of genetics and biotechnology.

   

Date Posted

11/02/2026

Overview

Objectives

  • Identify processes that assist in DNA replication proofreading.
  • Distinguish between different single nucleotide substitutions that occur during DNA replication.
  • Predict the frequency of different types of single base mutations.
  • Apply elements of DNA replication in the cell to the analysis of samples collected from infected individuals (PCR and DNA sequencing).
  • Compare sequences from patients to determine the progression of transmission.

Keywords

Phylogenetic forensics; phylogenetic analysis; mutation; DNA replication; molecular genetics; PCR; DNA sequencing; DNA proofreading; HIV transmission; David Acer; Florida dentist case;

  

Subject Headings

Biology (General)
Evolutionary Biology
Forensic Science
Genetics / Heredity

EDUCATIONAL LEVEL

Undergraduate lower division, Undergraduate upper division

  

FORMAT

PDF, PPTX

   

TOPICAL AREAS

Ethics, Legal issues

   

LANGUAGE

English

   

TYPE/METHODS

Directed, Discussion, Interrupted

 

 

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